Home Applications OMOP and Atlas on IRIS for Health

OMOP and Atlas on IRIS for Health

This application is not supported by InterSystems Corporation. Please be notified that you use it at your own risk.
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Implementation of the OMOP common data model on IRIS for Health

What's new in this version

Initial Release

omop_atlas_webapi

Getting started

  1. Download a project using command:

    git clone https://github.com/intersystems-community/omop_atlas_webapi.git
    
  2. Merge parts of compressed IRIS.DAT archives and CSV files:

    cd omop_atlas_webapi/iris/
    cat data.tar.gz.parta* > data.tar.gz
    cat db/irisapp.tar.gz.parta* > db/irisapp.tar.gz
    
  3. In the following files, replace the IP address 192.168.1.8 with the IP adress of the PC where you launch this container. DO NOT use localhost or 127.0.0.1!

    • /webapi/pom.xml
    • /atlas/docker/config-local.js
    • /atlas/js/config/app.js
  4. Build the container and launch it:

    docker-compose build --no-cache
    docker-compose up
    

    Building may take long time and it depends on the performance of host computer. Wait for a couple of minutes after the launch for the initialisation of container.

  5. Atlas will be available here http://<your.ip.address>:8081/atlas/. Once again, DO NOT use localhost or 127.0.0.1!

Made with
Version
1.0.027 Apr, 2023
Category
Solutions
Works with
InterSystems IRIS for Health
First published
27 Apr, 2023