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OMOP and Atlas on IRIS for Health

This application is not supported by InterSystems Corporation. Please be notified that you use it at your own risk.
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Implementation of the OMOP common data model on IRIS for Health

What's new in this version

Initial Release

omop_atlas_webapi

Getting started

  1. Download a project using command:

    git clone https://github.com/intersystems-community/omop_atlas_webapi.git
    
  2. Merge parts of compressed IRIS.DAT archives and CSV files:

    cd omop_atlas_webapi/iris/
    cat data.tar.gz.parta* > data.tar.gz
    cat db/irisapp.tar.gz.parta* > db/irisapp.tar.gz
    
  3. In the following files, replace the IP address 192.168.1.8 with the IP adress of the PC where you launch this container. DO NOT use localhost or 127.0.0.1!

    • /webapi/pom.xml
    • /atlas/docker/config-local.js
    • /atlas/js/config/app.js
  4. Build the container and launch it:

    docker-compose build --no-cache
    docker-compose up
    

    Building may take long time and it depends on the performance of host computer. Wait for a couple of minutes after the launch for the initialisation of container.

  5. Atlas will be available here http://<your.ip.address>:8081/atlas/. Once again, DO NOT use localhost or 127.0.0.1!

Made with
Version
1.0.027 Apr, 2023
Category
Solutions
Works with
InterSystems IRIS for Health
First published
27 Apr, 2023