About Health Data Application

This is an application to get Health Data samples for AutoML and another types of applications.

According to the WHO, The top global causes of death, in order of total number of lives lost, are associated with three broad topics (source: https://www.who.int/news-room/fact-sheets/detail/the-top-10-causes-of-death):

Cardiovascular (ischaemic heart disease, stroke),
Respiratory (chronic obstructive pulmonary disease, lower respiratory infections) and
Neonatal conditions – which include birth asphyxia and birth trauma, neonatal sepsis and infections, and preterm birth complications.

This application provides real data (without personal data) for some of these top 10 scenarios of diseases identified by WHO. The datasets for this application are:

10 real health datasets

Diabetes dataset: data to predict diabetes diagnosis
Heart Disease dataset: data to predict heart disease
Kidney Disease dataset: data to predict kidney disease
Breast Cancer dataset: data to predict breast cancer
Maternal Risk dataset: data to predict maternal risk level
Hospital Mortality dataset: data to predict hospital mortality
World Life Expectancy dataset: data to predict life expectancy based in the country social and health indicators
Pollution Deaths from fossil fuels dataset: data to predict deaths caused fossil fuels pollution
Dementia dataset: data to predict dementia
Hepatitis dataset: data to predict death risk caused hepatitis symptoms evolution

Installation

Clone/git pull the repo into any local directory

$ git clone https://github.com/yurimarx/automl-heart.git

Open a Docker terminal in this directory and run:

$ docker-compose build

Run the IRIS container:

$ docker-compose up -d

Do a Select to the HeartDisease dataset:

SELECT 
age, bp, chestPainType, cholesterol, ekgResults, exerciseAngina, fbsOver120, heartDisease, maxHr, numberOfVesselsFluro, sex, slopeOfSt, stDepression, thallium
FROM dc_data_health.HeartDisease

Do a Select to the Kidney Disease dataset:

SELECT 
age, al, ane, appet, ba, bgr, bp, bu, cad, classification, dm, hemo, htn, pc, pcc, pcv, pe, pot, rbc, rc, sc, sg, sod, su, wc
FROM dc_data_health.KidneyDisease

Do a Select to the Diabetes dataset:

SELECT 
Outcome, age, bloodpressure, bmi, diabetespedigree, glucose, insulin, pregnancies, skinthickness
FROM dc_data_health.Diabetes

Do a Select to the Breast Cancer dataset:

SELECT 
areamean, arease, areaworst, compactnessmean, compactnessse, compactnessworst, concavepointsmean, concavepointsse, concavepointsworst, concavitymean, concavityse, concavityworst, diagnosis, fractaldimensionmean, fractaldimensionse, fractaldimensionworst, perimetermean, perimeterse, perimeterworst, radiusmean, radiusse, radiusworst, smoothnessmean, smoothnessse, smoothnessworst, symmetrymean, symmetryse, symmetryworst, texturemean, texturese, textureworst
FROM dc_data_health.BreastCancer

Do a Select to the Maternal Health Risk dataset:

SELECT 
BS, BodyTemp, DiastolicBP, HeartRate, RiskLevel, SystolicBP, age
FROM dc_data_health.MaternalHealthRisk

Do a Select to the Hospital Mortality dataset:

SELECT 
age, aniongap, atrialfibrillation, basophils, bicarbote, bloodcalcium, bloodpotassium, bloodsodium, bmi, chdwithnomi, chloride, copd, creatinekise, creatinine, deficiencyanemias, depression, diabetes, diastolicbloodpressure, ef, gendera, glucose, "group", heartrate, hematocrit, hyperlipemia, hypertensive, inr, lacticaacid, leucocyte, lymphocyte, magnesiumion, mch, mchc, mcv, neutrophils, ntprobnp, outcome, pco2, ph, platelets, pt, rbc, rdw, relfailure, respiratoryrate, spo2, systolicbloodpressure, temperature, ureanitrogen, urineoutput
FROM dc_data_health.HospitalMortality

Do a Select to the Life Expectancy dataset:

SELECT 
AdultMortality, Alcohol, BMI, Country, Diphtheria, GDP, HIVAIDS, HepatitisB, IncomeCompositionOfResources, InfantDeaths, LifeExpectancy, Measles, PercentageExpenditure, Polio, Population, Schooling, Status, Thinness1To19Years, Thinness5To9Years, TotalExpenditure, UnderFiveDeaths, Year
FROM dc_data_health.LifeExpectancy

Do a Select to the Pollution Deaths dataset:

SELECT 
Country, CountryCode, DeathYear, ExcessMortality
FROM dc_data_health.PollutionDeaths

Do a Select to the Dementia dataset:

SELECT 
ASF, Age, CDR, EDUC, Genre, Hand, MMSE, MRDelay, Outcome, SES, Visit, eTIV, nWBV
FROM dc_data_health.Dementia

Do a Select to the Hepatitis Death risk dataset:

SELECT 
age, albumin, alkphosphate, anorexia, antivirals, ascites, bilirubin, fatigue, histology, liverbig, liverfirm, malaise, outcome, protime, sex, sgot, spiders, spleenpalpable, steroid, varices
FROM dc_data_health.Hepatitis

To install with ZPM

It’s packaged with ZPM so it could be installed as:

zpm "install dataset-health"

Dataset Licenses and sources/credits

MIT License for this Application
CC BY-NC-SA 4.0 License for the Breast Cancer Dataset
- Original Source: https://www.kaggle.com/uciml/breast-cancer-wisconsin-data
- File into the app: /opt/irisapp/data/breast-cancer.csv
- Persistent Class: dc.data.health.BreastCancer
CC0: Public Domain for Diabetes Dataset
- Original Source: https://www.kaggle.com/mathchi/diabetes-data-set
- File into the app: /opt/irisapp/data/diabetes.csv
- Persistent Class: dc.data.health.Diabetes
CC0: Public Domain for Heart Disease
- Original Source: https://data.world/informatics-edu/heart-disease-prediction
- File into the app: /opt/irisapp/data/heart-disease.csv
- Persistent Class: dc.data.health.HeartDisease
CC0: Public Domain for Maternal Health Risk
- Original Source: https://www.kaggle.com/yasserhessein/classification-maternal-health-5-algorithms-ml/data
- File into the app: /opt/irisapp/data/maternal_health_risk.csv
- Persistent Class: dc.data.health.MaternalHealthRisk
CC0: Public Domain for World Life Expectancy
- Original Source: https://www.kaggle.com/kumarajarshi/life-expectancy-who - The data was collected from WHO and United Nations website with the help of Deeksha Russell and Duan Wang.
- File into the app: /opt/irisapp/data/life_expectancy.csv
- Persistent Class: dc.data.health.LifeExpectancy
CC0 1.0 Universal (CC0 1.0) Public Domain Dedication for Hospital Mortality
- Original Source: https://www.kaggle.com/saurabhshahane/in-hospital-mortality-prediction (Zhou, Jingmin et al. (2021), Prediction model of in-hospital mortality in intensive care unit patients with heart failure: machine learning-based, retrospective analysis of the MIMIC-III database, Dryad, Dataset, https://doi.org/10.5061/dryad.0p2ngf1zd)
- File into the app: /opt/irisapp/data/hospital_mortality.csv
- Persistent Class: dc.data.health.HospitalMortality
CC0 1.0 Universal (CC0 1.0) Public Domain for Pollution Deaths dataset
- Original Source: https://www.kaggle.com/mathurinache/pollution-deaths
- File into the app: /opt/irisapp/data/pollution-deaths-from-fossil-fuels.csv
- Persistent Class: dc.data.health.PollutionDeaths
Attribution-NonCommercial-ShareAlike 3.0 IGO (CC BY-NC-SA 3.0 IGO) for Dementia dataset
- Original Source: https://www.kaggle.com/shashwatwork/dementia-prediction-dataset
- File into the app: /opt/irisapp/data/dementia.csv
- Persistent Class: dc.data.health.Dementia
CC0 1.0 Universal (CC0 1.0) Public Domain for Hepatitis Death Risk dataset
- Original Source: https://www.kaggle.com/codebreaker619/hepatitis-data
- File into the app: /opt/irisapp/data/hepatitis.csv
- Persistent Class: dc.data.health.Hepatitis
CC0: Public Domain for Kidney Disease
- Original Source:
  - @misc{Dua:2019 ,
  - author = “Dua, Dheeru and Graff, Casey”,
  - year = “2017”,
  - title = “{UCI} Machine Learning Repository”,
  - url = “http://archive.ics.uci.edu/ml”,
  - institution = “University of California, Irvine, School of Information and Computer Sciences” }
- File into the app: /opt/irisapp/data/kidney_disease.csv
- Persistent Class: dc.data.health.KidneyDisease

Health Dataset

Experts nomination

InterSystems Datasets Contest